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DSL2 MultiVCFAnalyzer#1142

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TCLamnidis merged 15 commits intonf-core:mvafrom
aidaanva:mva
Feb 13, 2026
Merged

DSL2 MultiVCFAnalyzer#1142
TCLamnidis merged 15 commits intonf-core:mvafrom
aidaanva:mva

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@aidaanva
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@aidaanva aidaanva commented May 2, 2025

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/eager/tree/master/.github/CONTRIBUTING.md)
    • If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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nf-core-bot commented May 2, 2025 •
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.2.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@TCLamnidis TCLamnidis mentioned this pull request May 2, 2025
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@jfy133
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jfy133 commented May 9, 2025

Side note: sould it be --consesnsus_tool or conssensus_sequence_tool?

Could condense --run_consensusseuqence instead for example, if that's the top level thing

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jfy133 commented May 9, 2025

@aidaanva I've got to the the point where the 'latest' error is now within the CONSENSUS_SEQUENCE subworkflow, so you can continue from there :) It's a proper join error now :)

@TCLamnidis TCLamnidis mentioned this pull request May 23, 2025
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@TCLamnidis
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TCLamnidis commented Feb 13, 2026

I'll merge this PR into a dedicated branch on the eager repo, to make dev a bit easier for myself, then continue from there.

@TCLamnidis TCLamnidis changed the base branch from dev to mva February 13, 2026 09:25
@TCLamnidis TCLamnidis merged commit b2de835 into nf-core:mva Feb 13, 2026
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@TCLamnidis TCLamnidis mentioned this pull request Feb 13, 2026
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@aidaanva @nf-core-bot @jfy133 @TCLamnidis
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